Hello All, I am trying to setup job submission to pbs server running on our cluster.
I have python 2.7 installed in /usr/local along with easy_install. But when trying to compile pbs_python I am getting following error: [galaxy@galaxy galaxy-dist]$ LIBTORQUE_DIR=/usr/lib python scripts/scramble.py -e pbs_python fetch_one(): Trying to fetch: http://eggs.galaxyproject.org/pbs_python/pbs_python-4.3.5.tar.gz fetch_one(): Fetched to: /home/galaxy/galaxy-dist/scripts/scramble/archives/pbs_python-4.3.5.tar.gz unpack_source(): Unpacked to: /home/galaxy/galaxy-dist/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python copy_build_script(): Using build script /home/galaxy/galaxy-dist/scripts/scramble/scripts/pbs_python.py run_scramble_script(): Beginning build run_scramble_script(): Executing in /home/galaxy/galaxy-dist/scripts/scramble/build/py2.7-linux-x86_64-ucs4/pbs_python: /home/galaxy/galaxy-python/python scramble.py Traceback (most recent call last): File "scramble.py", line 14, in <module> from scramble_lib import * File "../../../lib/scramble_lib.py", line 146, in <module> from setuptools import * File "build/bdist.linux-x86_64/egg/setuptools/__init__.py", line 11, in <module> File "build/bdist.linux-x86_64/egg/setuptools/extension.py", line 8, in <module> File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 21, in <module> AttributeError: 'module' object has no attribute 'packaging' Traceback (most recent call last): File "scripts/scramble.py", line 50, in <module> egg.scramble() File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py", line 57, in scramble self.run_scramble_script() File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py", line 210, in run_scramble_script raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.name, self.version ) ) galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for pbs_python 4.3.5 I also tried setuptools-18.0.1 installed in user's local path but I am still getting the same error. It is Centos 6.6 OS. Any help would be appreciated. -- Regards, -- Zuzanna K. Filutowska, HPC Systems Administrator Poznan Supercomputing and Networking Center Institute of Bioorganic Chemistry Polish Academy of Sciences Seize the day boys! Make your lifes extraordinary! --John Keating ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
