I was referring to Galaxy's requirements .txt This appears to be an issue with changes made to galaxy last weekend.
The very same Planemo work with commit 1aecca7889681ad9518e26e2a62b470809d2cdd1 Author: Björn Grüning <bjo...@gruenings.eu> Date: Sat Nov 14 23:56:19 2015 +0100 But fails at or BEFORE commit b19e71ec465c7145840acf684f8f09eeebb99b5a Author: Nicola Soranzo <nicola.sora...@tgac.ac.uk> Date: Mon Nov 16 14:57:53 2015 +0000 Christian ________________________________________ From: Peter Cock [p.j.a.c...@googlemail.com] Sent: Friday, November 20, 2015 12:41 PM To: Christian Brenninkmeijer Cc: John Chilton; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Unable to up Planemo against latest dev Which file are you looking at? There is no nose entry here: https://github.com/galaxyproject/planemo/blob/master/requirements.txt Perhaps a more recent version of nose is needed? Peter On Fri, Nov 20, 2015 at 11:51 AM, Christian Brenninkmeijer <christian.brenninkmei...@manchester.ac.uk> wrote: > Hi Peter/ John > requirementx.txt already includes the latest version of nose > > nose==1.3.7 > > It is nose that is complaining it does not like the sys,args passed in by > FunctionalTest.py > > Christian > > ________________________________________ > From: Peter Cock [p.j.a.c...@googlemail.com] > Sent: Friday, November 20, 2015 11:30 AM > To: Christian Brenninkmeijer; John Chilton > Cc: galaxy-dev@lists.galaxyproject.org > Subject: Re: [galaxy-dev] Unable to up Planemo against latest dev > > On Fri, Nov 20, 2015 at 9:59 AM, Christian Brenninkmeijer > <christian.brenninkmei...@manchester.ac.uk> wrote: >> Hi All, >> >> I am unable to run Planemo against the latest dev branch. >> >> 1. import twill error >> >> I was able to fix this by adding to requirements.txt >> twill==1.8.0 >> lxml==3.5.0 >> cssselect==0.9.1 >> >> But then I get >> >> functional_tests.py: error: no such option: --with-nosehtml >> functional_tests.py ERROR 2015-11-20 09:57:23,066 Failure running tests >> Traceback (most recent call last): >> ... >> SystemExit: 2 > > That's not a very helpful error, is it? It reminds me of a missing > dependency / installation problem I had long ago when first > setting up TravisCI to run Galaxy tool tests: > > https://github.com/peterjc/pico_galaxy/commit/c8265f4a42caf62eb3bc8b36b475f16cc06f1944#diff-354f30a63fb0907d4ad57269548329e3R126 > > @John: My guess is we need to add "nose" to planemo's requirements.txt > to ensure this gets installed automatically? > > Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
