Hello Galaxy-devs,

I am setting up galaxy on current os x 10.11 and encounter this trouble using 
galaxy to install pixman-0.32.4:
the package gets downloaded successfully from 
http://cairographics.org/releases/pixman-0.32.4.tar.gz 
<http://cairographics.org/releases/pixman-0.32.4.tar.gz>
… while following the installation process in terminal I see this output during 
the process …presumably indicating an gcc problem
...
install_environment.STDOUT DEBUG 2015-12-01 10:44:18,096 checking build system 
type... x86_64-apple-darwin15.0.0
install_environment.STDOUT DEBUG 2015-12-01 10:44:18,099 checking for gcc... gcc
checking build system type... x86_64-apple-darwin15.0.0
checking host system type... x86_64-apple-darwin15.0.0
checking for gcc... gcc
checking whether the C compiler works... no
configure: error: in 
`/Users/hans/galaxy/database/tmp/tmp-toolshed-mtdKC9F_F/pixman-0.32.4':
configure: error: C compiler cannot create executables
See `config.log' for more details

Curiously, if I download the pixman package (same URL) outside of galaxy and 
run ./configure … gcc seems to work :
...
checking build system type... x86_64-apple-darwin15.0.0
checking host system type... x86_64-apple-darwin15.0.0
checking for gcc... gcc
checking whether the C compiler works… yes
...
and ./configure finishes OK.

to actually compile/make pixman properly, I have to use the ./configure 
—disable-mmx option to avoid another known error
(pixman-mmx.c:100:20: error: constraint 'K' expects an integer constant 
expression
        : "y" (__A), "K" (__N))

Perhaps someone is using galaxy on Mac OS X how this difference in gcc handling 
arises?
Thanks very much,

Hans Rudolph
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