which operating system are you using? We ship precompiled binaries for
x64-linux systems. So I wonder why your Galaxy is trying to compile R.

Can you provide us with the INSTALLATION.log from the R package?


Am 03.12.2015 um 00:49 schrieb Hans Rudolph:
> Hi Björn,
> thanks very much for your efforts. Unfortunately, installation of the new 
> deseq2-1-8-2 (uic, 2015-12-02) still fails for me -
> apparently due to the included package_r_3_2_1 which fails with "configure: 
> error: C compiler cannot create executables”
> and the R error status stops deseq2 installation with error "/bin/sh: line 7: 
> Rscript: command not found”.
> But all the other dependencies in the deseq2-1-8-2 package:
> atlas-3-10
> cairo-1-12-14
> fontconfig-2-11-1
> freetype-2-5-2
> libpng-1-6-7
> libxml2-2-9-1
> ncurses-6-0
> pixman-0.32-4
> pixman-0-32-6
> readline-6-3
> show the green label “installed” as installation status.
> Best regards,
> Hans
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to