Hi, I use Mac OS X 10.11.1 (El Capitan) - I append terminal output during the r-package installation and R INSTALLATION.LOG Cheers, Hans
tool_shed.galaxy_install.tool_dependencies.recipe.step_handler DEBUG 2015-12-02 23:04:16,463 Successfully downloaded from url: http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz install_environment.STDOUT DEBUG 2015-12-02 23:04:17,017 checking host system type... x86_64-apple-darwin15.0.0 install_environment.STDOUT DEBUG 2015-12-02 23:04:17,031 loading build-specific script './config.site' install_environment.STDOUT DEBUG 2015-12-02 23:04:17,049 checking whether builddir is srcdir... yes checking build system type... x86_64-apple-darwin15.0.0 checking host system type... x86_64-apple-darwin15.0.0 loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes install_environment.STDOUT DEBUG 2015-12-02 23:04:17,221 checking for working autoconf... found checking for working aclocal... found checking for working autoconf... found checking for working automake... found install_environment.STDOUT DEBUG 2015-12-02 23:04:17,519 checking for working autoheader... found install_environment.STDOUT DEBUG 2015-12-02 23:04:17,526 checking for mawk... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,526 checking for awk... awk install_environment.STDOUT DEBUG 2015-12-02 23:04:17,526 checking for bison... bison -y checking for working autoheader... found checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether ln -s works... yes checking for bison... bison -y checking for ar... ar install_environment.STDOUT DEBUG 2015-12-02 23:04:17,557 checking for a BSD-compatible install... /usr/bin/install -c install_environment.STDOUT DEBUG 2015-12-02 23:04:17,560 checking for which... /usr/bin/which install_environment.STDOUT DEBUG 2015-12-02 23:04:17,564 checking for gtar... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,565 checking for tar... /usr/bin/tar install_environment.STDOUT DEBUG 2015-12-02 23:04:17,568 checking for pdftex... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,575 checking for makeindex... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,576 checking for texi2dvi... /usr/bin/texi2dvi install_environment.STDOUT DEBUG 2015-12-02 23:04:17,580 checking for latex inconsolata package... checking for unzip... /usr/bin/unzip install_environment.STDOUT DEBUG 2015-12-02 23:04:17,583 checking for gzip... /usr/bin/gzip install_environment.STDOUT DEBUG 2015-12-02 23:04:17,585 checking for firefox... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,588 checking for galeon... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,591 checking for xdg-open... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,593 checking for gnome-moz-remote... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,595 using default browser ... /usr/bin/open install_environment.STDOUT DEBUG 2015-12-02 23:04:17,598 checking for acroread4... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,600 checking for evince... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,603 checking for gv... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,606 checking for ggv... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,608 checking for kpdf... no install_environment.STDOUT DEBUG 2015-12-02 23:04:17,612 checking for notangle... false install_environment.STDOUT DEBUG 2015-12-02 23:04:17,616 checking for pkg-config... /opt/local/bin/pkg-config checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... /usr/bin/tar checking for tex... no checking for pdftex... no checking for pdflatex... no checking for makeindex... no checking for texi2any... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... no checking for latex inconsolata package... checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /opt/local/bin/bzip2 checking for firefox... no checking for mozilla... no checking for galeon... no checking for opera... no checking for xdg-open... no checking for kfmclient... no checking for gnome-moz-remote... no checking for open... /usr/bin/open using default browser ... /usr/bin/open checking for acroread... no checking for acroread4... no checking for xdg-open... no checking for evince... no checking for xpdf... no checking for gv... no checking for gnome-gv... no checking for ggv... no checking for okular... no checking for kpdf... no checking for open... /usr/bin/open checking for notangle... false checking for realpath... false checking for pkg-config... /opt/local/bin/pkg-config checking for gcc... gcc configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: you cannot build PDF versions of vignettes and help pages configure: WARNING: you cannot build info or HTML versions of the R manuals install_environment.STDOUT DEBUG 2015-12-02 23:04:17,810 checking whether the C compiler works... no checking whether the C compiler works... no configure: error: in `/Users/hans/galaxy/database/tmp/tmp-toolshed-mtdI4h21b/R-3.2.1': configure: error: C compiler cannot create executables See `config.log' for more details
INSTALLATION.log
Description: Binary data
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