Ok i did not saw it.
I runned it with ./ and it worked fine. It gave me the same answer you gave me 


-----Message d'origine-----
De : Peter Cock [mailto:p.j.a.c...@googlemail.com] 
Envoyé : vendredi 4 décembre 2015 12:40
À : Olivier CLAUDE <o.cla...@outlook.fr>
Cc : galaxy-dev@lists.galaxyproject.org
Objet : Re: [galaxy-dev] wolfpsort

On Fri, Dec 4, 2015 at 11:19 AM, Olivier CLAUDE <o.cla...@outlook.fr> wrote:
> Hi Peter,
> Thanks for all.
> ...
>> What happens if you try to do this:
>> $ cd /path/you/put/wolfpsort
>> $ ./runWolfPsortSummary animal 
>> <~/repositories/pico_galaxy/test-data/four_human_proteins.fasta
> It gives me :
>         olivier@LM1166 ~/galaxy/CBS/WoLFPSort-master/bin $ 
> runWolfPsortSummary animal <~/galaxy/test-data/four_human_proteins.fasta
>         sh: 1: /bin/checkFastaInput.pl: not found
>         sh: 1: /bin/psortModifiedForWolfFiles/psortModifiedForWoLF: not found
>         /home/paulh/cbrcRepos/C++/utils/argvParsing/ArgvParser.hh:291 Error 
> opening file: "/bin/../data//animal.wolfw"
>         Usage: /bin/wolfPredict [OPTIONS] weightFile trainingDataFile 
> utilityMatrixFile

That's not what I meant, there is a small but important difference.

Just runWolfPsortSummary will search the $PATH for runWolfPsortSummary script.

I wanted you to use ./runWolfPsortSummary with a dot slash at the start which 
means look in the current director for the runWolfPsortSummary script.

Please try:

$ cd ~/galaxy/CBS/WoLFPSort-master/bin
$ ./runWolfPsortSummary animal <~/galaxy/test-data/four_human_proteins.fasta


Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to