Ok i did not saw it. I runned it with ./ and it worked fine. It gave me the same answer you gave me earlier.
Olivier -----Message d'origine----- De : Peter Cock [mailto:p.j.a.c...@googlemail.com] Envoyé : vendredi 4 décembre 2015 12:40 À : Olivier CLAUDE <o.cla...@outlook.fr> Cc : email@example.com Objet : Re: [galaxy-dev] wolfpsort On Fri, Dec 4, 2015 at 11:19 AM, Olivier CLAUDE <o.cla...@outlook.fr> wrote: > Hi Peter, > Thanks for all. > > ... > >> >> What happens if you try to do this: >> >> $ cd /path/you/put/wolfpsort >> $ ./runWolfPsortSummary animal >> <~/repositories/pico_galaxy/test-data/four_human_proteins.fasta >> > > It gives me : > > olivier@LM1166 ~/galaxy/CBS/WoLFPSort-master/bin $ > runWolfPsortSummary animal <~/galaxy/test-data/four_human_proteins.fasta > sh: 1: /bin/checkFastaInput.pl: not found > sh: 1: /bin/psortModifiedForWolfFiles/psortModifiedForWoLF: not found > /home/paulh/cbrcRepos/C++/utils/argvParsing/ArgvParser.hh:291 Error > opening file: "/bin/../data//animal.wolfw" > Usage: /bin/wolfPredict [OPTIONS] weightFile trainingDataFile > utilityMatrixFile That's not what I meant, there is a small but important difference. Just runWolfPsortSummary will search the $PATH for runWolfPsortSummary script. I wanted you to use ./runWolfPsortSummary with a dot slash at the start which means look in the current director for the runWolfPsortSummary script. Please try: $ cd ~/galaxy/CBS/WoLFPSort-master/bin $ ./runWolfPsortSummary animal <~/galaxy/test-data/four_human_proteins.fasta Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/