Hi Ulf, I did not notified natefoo, since I make it work.
I do not remember clearly how I managed to solve this problem. But I think that I installed it manually through two ways : I installed in linux via synaptic, and then retried in galaxy. Now it is working fine but I can't remember if this was sufficient to make it work or not. At the beginning I was on a 32bit machine and I switched to a 64 bits since some tools weren't able to run with 32bits. Everything then is based on x86_64. Good luck, Olivier -----Message d'origine----- De : Ulf Schaefer [mailto:ulf.schae...@phe.gov.uk] Envoyé : mercredi 1 juin 2016 11:50 À : Olivier CLAUDE <o.cla...@outlook.fr>; 'Peter Cock' <p.j.a.c...@googlemail.com>; nsora...@tiscali.it Cc : galaxy-dev@lists.galaxyproject.org Objet : Re: [galaxy-dev] atlas 3.10 IUC error Hi all Sorry to be resuscitating this old thread, but has anyone looked at it, or has an issue been created on Github, notifying @natefoo? I am running into the same issue, only the machine that the compile from source fails on actually is x86_64. So I am not sure why it is not using the pre-compiled binaries. On another x86_64 machine the install works fine with the pre-compiled binaries. Thanks very much Ulf On 04/11/15 08:26, Olivier CLAUDE wrote: > Thanks Peter, Nicola, > > Ok, I'll try to switch on an 64bits computer then, maybe there's some other > errors due to this. > Thanks a lot. > > Olivier > > -----Message d'origine----- > De : Peter Cock [mailto:p.j.a.c...@googlemail.com] > Envoyé : mardi 3 novembre 2015 19:24 > À : o.cla...@outlook.fr > Cc : Nicola Soranzo <nsora...@tiscali.it>; > galaxy-dev@lists.galaxyproject.org > Objet : Re: [galaxy-dev] atlas 3.10 IUC error > > On Tue, Nov 3, 2015 at 6:16 PM, <o.cla...@outlook.fr> wrote: >> Hi Nicola >> >> It is an i686. Is it a problem ? >> >> Cheers, >> Olivier > > Currently only for 64bit Linux are pre-compiled binaries used: > > https://github.com/galaxyproject/tools-iuc/blob/master/packages/packag > e_atlas_3_10/tool_dependencies.xml > > There's a special case for Mac, but otherwise the current Atlas recipe would > attempt to compile from source for 32bit Linux. And that is failing for some > reason... > > The easiest fix would be if pre-compiled binaries for 32bit Linux were > available, we would need <actions os="linux" architecture="i386"> and/or > <actions os="linux" architecture="i686"> actions, e.g. > > https://github.com/peterjc/galaxy_blast/blob/master/packages/package_b > last_plus_2_2_30/tool_dependencies.xml > > However, the compile from source recipe will need looking at... > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this and other > Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ************************************************************************** The information contained in the EMail and any attachments is confidential and intended solely and for the attention and use of the named addressee(s). It may not be disclosed to any other person without the express authority of Public Health England, or the intended recipient, or both. If you are not the intended recipient, you must not disclose, copy, distribute or retain this message or any part of it. This footnote also confirms that this EMail has been swept for computer viruses by Symantec.Cloud, but please re-sweep any attachments before opening or saving. http://www.gov.uk/PHE ************************************************************************** ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
