> On Jun 29, 2016, at 7:02 AM, Philipp Rathert > <philipp.rath...@ibc.uni-stuttgart.de> wrote: > > Hi Ido, > > I get no error message, but the command does not change anything. Rights are > still assigned to host user and not to postgresql. > > Could it be that, since galaxy and other program were running in a docker > container, none of these users are known in the actual host environment?
That could very well be, and it is something I was hoping would be fixed in Docker for Mac. My work around in classic Docker is to make sure Galaxy/Postgres use the same GID/UID inside the container as on my host system. However, this requires (as far as I recall) rebuilding the Docker image as this is where UID/GID for Galaxy/Postgres are assigned. Hope that helps, Keith > > > Cheers, > > Philipp > > -----Original Message----- > From: Tamir,Ido [mailto:ido.ta...@vbcf.ac.at] > Sent: Wednesday, June 29, 2016 12:50 PM > To: Rathert, Philipp, Dr. <philipp.rath...@ibc.uni-stuttgart.de> > Cc: galaxy-dev@lists.galaxyproject.org > Subject: Re: [galaxy-dev] Docker for Mac > >> >> On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. >> <philipp.rath...@ibc.uni-stuttgart.de> wrote: >> >> And I have the additional problem that I have to assign ownership >> rights to the folders in /export and I get the following error: >> >> >> chown -R postgres:postgres /postgresql >> chown: postgres: illegal group name >> > > I think on OSX the user/group is _postgres and it should be >> chown -R _postgres:_postgres /export > > >> On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. >> <philipp.rath...@ibc.uni-stuttgart.de> wrote: >> >> Dear all I was wondering if anybody has experience running a galaxy >> production server using docker for mac. I know it's beta testing at >> the moment but since the Virtual machine environment gave us such a >> hard time preserving and managing user data etc. I thought I try it anyway... >> >> However, it seems to be not as easy as expected. >> >> after installation of docker I pull the new docker galaxy image with >> docker pull quay.io/bgruening/galaxy:16.04 When I start a test >> container with net=host docker run -it --net=host >> quay.io/bgruening/galaxy:16.04) I am not able to connect to the >> galaxy web app and get this error: >> >> >> Starting ProFTP >> proftpd: ERROR (abnormal termination) >> >> >> and >> >> >> >> ==> /home/galaxy/logs/slurmd.log <== >> [2016-06-29T08:13:41.440] error: Unable to resolve "moby": Unknown >> host [2016-06-29T08:13:41.440] error: Unable to establish control >> machine address >> >> >> >> I then tried to use Kinematik and at least I get the web app running. >> However, I didn't find the option to change the network settings to >> net=host >> >> >> >> And I have the additional problem that I have to assign ownership >> rights to the folders in /export and I get the following error: >> >> >> chown -R postgres:postgres /postgresql >> chown: postgres: illegal group name >> >> I know these are many issues, but maybe one of you has experience with >> this and could provide some help. >> >> Thanks a lot, >> >> Philipp >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this and other >> Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ------------------------------ Research Associate Department of Computer Science Vassar College Poughkeepsie, NY
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___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
