I am running the Docker for Mac (beta) and have a Galaxy, some what customized via the Dockerfile, but otherwise out of the box. The owner in my mac storage volume is me and within the docker , root, galaxy, or postgres. I've customized the welcome.html and base.css. root@5017ac030db9:/export# ls -l total 281 -rw-r--r-- 1 root root 282334 Jun 20 13:52 base.css drwxr-xr-x 8 galaxy galaxy 272 Jun 29 17:50 galaxy-central drwxr-xr-x 3 postgres postgres 102 Jun 1 20:26 postgresql drwxr-xr-x 4 galaxy galaxy 136 Jun 16 15:46 shed_tools drwxr-xr-x 3 root root 102 Jun 1 20:26 var -rw-r--r-- 1 root root 2543 Jun 1 20:28 welcome.html
And on the Mac dlapoi01$ ls -l total 560 -rw-r--r-- 1 dlapoi01 staff 282334 Jun 20 09:52 base.css drwxr-xr-x@ 8 dlapoi01 staff 272 Jun 29 13:50 galaxy-central drwxr-xr-x@ 3 dlapoi01 staff 102 Jun 1 16:26 postgresql drwxr-xr-x@ 4 dlapoi01 staff 136 Jun 16 11:46 shed_tools drwxr-xr-x 3 dlapoi01 staff 102 Jun 1 16:26 var -rw-r--r-- 1 dlapoi01 staff 2543 Jun 1 16:28 welcome.html So something is at work here. I don't use the —net=HOST but I can connect to the ports (:8080) from remote systems. -- David Lapointe Ph.D. Sr. Bioinformatics Specialist Research Technology (RT) Tufts Technology Services (TTS) 16 Dearborn Road Somerville MA 02144 Phone: 617-627-5319 Fax: 617-627-3667 http://it.tufts.edu From: galaxy-dev <[email protected]<mailto:[email protected]>> on behalf of "Rathert, Philipp, Dr." <[email protected]<mailto:[email protected]>> Date: Wednesday, June 29, 2016 at 4:23 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [galaxy-dev] Docker for Mac Dear all I was wondering if anybody has experience running a galaxy production server using docker for mac. I know it's beta testing at the moment but since the Virtual machine environment gave us such a hard time preserving and managing user data etc. I thought I try it anyway... However, it seems to be not as easy as expected. after installation of docker I pull the new docker galaxy image with docker pull quay.io/bgruening/galaxy:16.04 When I start a test container with net=host docker run -it --net=host quay.io/bgruening/galaxy:16.04) I am not able to connect to the galaxy web app and get this error: Starting ProFTP proftpd: ERROR (abnormal termination) and ==> /home/galaxy/logs/slurmd.log <== [2016-06-29T08:13:41.440] error: Unable to resolve "moby": Unknown host [2016-06-29T08:13:41.440] error: Unable to establish control machine address I then tried to use Kinematik and at least I get the web app running. However, I didn't find the option to change the network settings to net=host And I have the additional problem that I have to assign ownership rights to the folders in /export and I get the following error: chown -R postgres:postgres /postgresql chown: postgres: illegal group name I know these are many issues, but maybe one of you has experience with this and could provide some help. Thanks a lot, Philipp
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