Previously, the BLAST wrapper was able to use multiple cores but recently users 
have started complaining it has got really slow and when I look at the cluster 
a job is only using a single core. I don’t want jobs split across multiple 
cluster nodes, but each node has 16 cores so it would be good if they could be 
used. I’m still using the older 16.01 release and this has been upgraded 
repeatedly over the last few years so I’m still using the universe_wsg.ini file 
(sym linked to config/galaxy.ini) and I don’t have a job_conf.xml set up. I’m 
using drmaa to drive an LSF cluster. BLAST is the main issue here so I was 
wondering if there’s a way to pass the -num_threads flag without breaking 
everything until I can build up a new server?

Dr. Shane Sturrock
NZGL BioIT Admin

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to