Dear galaxy-dev list,
I'm currently trying to introduce myself to the galaxy server, i.e.,
learning how to use and administer a galaxy server.
I have installed galaxy following this excellent tutorial:
https://github.com/martenson/dagobah-training
Then I tried the tool "FASTQ Quality Trimmer by sliding window" which is
mentioned in NGS101-6 tutorial. I installed the tool from tool shed, but
I get a python error (the Admin panel shows that all dependencies are
installed):
Traceback (most recent call last):
File
"/home/berntm/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/25c24379693a/fastq_trimmer_by_quality/fastq_trimmer_by_quality.py",
line 3, in <module>
from galaxy_utils.sequence.fastq import fastqReader, fastqWriter
File "/home/berntm/galaxy/lib/galaxy_utils/sequence/fastq.py", line
7, in <module>
from six import Iterator, string_types
ImportError: No module named six
Do you have an idea what could be wrong? I guess that this is to little
information, but I did not know which kind of additional information
would be helpful.
Another question: At my institution quite a lot of NGS projects are
carried out. After a project is finished all methods and data are stored
to a long term read only tape archive. For the future the idea is to use
galaxy. Which options are there to implement such a project life cycle
with galaxy?
A last general question: would it be better to send a separate mail to
the list when I have multiple questions?
Best regards,
Matthias Bernt
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