Hi Matthias, to your life cycle question, do you have more information about your filesystem(s) and what you have specifically in mind? Everything is possible I guess, from a hack to a advanced solution like iRODS.
My feeling is that this should be implemented on the FS level and not on the Galaxy level. Ciao, Bjoern > Dear galaxy-dev list, > > I'm currently trying to introduce myself to the galaxy server, i.e., > learning how to use and administer a galaxy server. > > I have installed galaxy following this excellent tutorial: > > https://github.com/martenson/dagobah-training > > Then I tried the tool "FASTQ Quality Trimmer by sliding window" which is > mentioned in NGS101-6 tutorial. I installed the tool from tool shed, but > I get a python error (the Admin panel shows that all dependencies are > installed): > > Traceback (most recent call last): > File > "/home/berntm/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/25c24379693a/fastq_trimmer_by_quality/fastq_trimmer_by_quality.py", > line 3, in <module> > from galaxy_utils.sequence.fastq import fastqReader, fastqWriter > File "/home/berntm/galaxy/lib/galaxy_utils/sequence/fastq.py", line 7, > in <module> > from six import Iterator, string_types > ImportError: No module named six > > Do you have an idea what could be wrong? I guess that this is to little > information, but I did not know which kind of additional information > would be helpful. > > Another question: At my institution quite a lot of NGS projects are > carried out. After a project is finished all methods and data are stored > to a long term read only tape archive. For the future the idea is to use > galaxy. Which options are there to implement such a project life cycle > with galaxy? > > A last general question: would it be better to send a separate mail to > the list when I have multiple questions? > > Best regards, > Matthias Bernt > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
