The documentation here is quite good:
https://docs.galaxyproject.org/en/master/admin/conda_faq.html
As an aside, the dockerized version of Galaxy
(https://github.com/bgruening/docker-galaxy-stable) from Björn Gruening
makes this convenient.
Devon
On 03/08/2017 08:55 PM, Md. Rezaul Karim wrote:
Hi Devon,
I'm also experiencing similar issues. Could you please briefly explain
how to use Condo with Galaxy?
Is there any other versions where Conda is integrated apart from the
regular Galaxy distributions?
On Mar 8, 2017 7:38 PM, "Devon Ryan" <dprya...@gmail.com
<mailto:dprya...@gmail.com>> wrote:
Hi Timo,
Use conda for dependency resolution in Galaxy and make your life
easier :)
Devon
On 03/08/2017 06:31 PM, Timo Janßen wrote:
Hi all,
trying to install the deeptools_suite from the toolshed I only get the
following error:
"500 Internal Server Error
nginx/1.11.10"
This happens as well for the dependencies, e.g. deeptools_bigwig_compare.
I am currently using Galaxy 16.10 with nginx proxy.
Also the installation of the dependency
package_python_2_7_matplotlib_1_4 fails because of a missing dependency:
"Error installing tool dependency python version 2.7.10: Unable to
locate required tool shed repository named package_python_2_7_10 owned
by iuc with revision 80931fb5f433."
Has anyone seen these problems before and knows a solution?
Best regards,
Timo Janßen
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Devon Ryan, PhD
Bioinformatician / Data manager
Bioinformatics Core Facility
Max Planck Institute for Immunobiology and Epigenetics
Email:dprya...@gmail.com <mailto:dprya...@gmail.com>
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use the unified search at:
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--
Devon Ryan, PhD
Bioinformatician / Data manager
Bioinformatics Core Facility
Max Planck Institute for Immunobiology and Epigenetics
Email: dprya...@gmail.com
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