Try installing libbz2-dev (or whatever that's called on your system),
since it's not in the normal conda channels.

Devon
--
Devon Ryan, Ph.D.
Email: dpr...@dpryan.com
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Wed, Jul 5, 2017 at 2:51 PM, Previti
<christopher.prev...@dkfz-heidelberg.de> wrote:
> Dear all,
>
> I was wondering if anybody has seen the following error after installing
> deeptools in the galaxy interface:
>
> Fatal error: Exit code 1 ()
> Traceback (most recent call last):
>   File
> "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/bin/plotCoverage",
> line 4, in <module>
>     from deeptools.plotCoverage import main
>   File
> "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/deeptools/plotCoverage.py",
> line 15, in <module>
>     import deeptools.countReadsPerBin as countR
>   File
> "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/deeptools/countReadsPerBin.py",
> line 9, in <module>
>     import deeptools.utilities
>   File
> "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/deeptools/utilities.py",
> line 3, in <module>
>     import pysam
>   File
> "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/pysam/__init__.py",
> line 5, in <module>
>     from pysam.libchtslib import *
> ImportError: libbz2.so.1.0: cannot open shared object file: No such file or
> directory
>
>
> Has anybody encountered this error before and were you able to resolve it?
>
> Thanks and best regards,
>
> Christopher Previti
>
>
>
> --
> Dr. Christopher Previti
> Genomics and Proteomics Core Facility
> High Throughput Sequencing (W190)
> Bioinformatician
>
> German Cancer Research Center (DKFZ)
> Foundation under Public Law
> Im Neuenheimer Feld 580
> 69120 Heidelberg
> Germany
> Room: B2.102 (INF580/TP3)
> Phone: +49 6221 42-4434
>
> christopher.prev...@dkfz.de
> www.dkfz.de
>
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