Dear all,

I was wondering if anybody has seen the following error after installing
deeptools in the galaxy interface:

Fatal error: Exit code 1 ()
Traceback (most recent call last):
  File 
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/bin/plotCoverage",
 line 4, in <module>
    from deeptools.plotCoverage import main
  File 
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/deeptools/plotCoverage.py",
 line 15, in <module>
    import deeptools.countReadsPerBin as countR
  File 
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/deeptools/countReadsPerBin.py",
 line 9, in <module>
    import deeptools.utilities
  File 
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/deeptools/utilities.py",
 line 3, in <module>
    import pysam
  File 
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/pysam/__init__.py",
 line 5, in <module>
    from pysam.libchtslib import *
ImportError: libbz2.so.1.0: cannot open shared object file: No such file or 
directory


Has anybody encountered this error before and were you able to resolve it?

Thanks and best regards,

Christopher Previti

 

-- 
*Dr. Christopher Previti*
Genomics and Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician

German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4434

christopher.prev...@dkfz.de <http://www.dkfz.de/>
www.dkfz.de <http://www.dkfz.de/>

Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537

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