Hi Galaxy people,

I have transcripts predicted by Cufflinks that are in a gtf file. How can I extract the sequences corresponding to those transcripts, using Galaxy?

        [Cufflinks transcript predictions in gtf file] + [Genome sequence in FASTA 
file] ---> [FASTA file of transcript sequences]

My genome is a custom genome (not at UCSC).


I'll also need to do the same thing, except my predicted transcripts are in a Scripture bed file.

Thanks for your help!

Karen Tang :)
Plant Biology
University of Minnesota

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