Hi Galaxy people,
I have transcripts predicted by Cufflinks that are in a gtf
file. How can I extract the sequences corresponding to those
transcripts, using Galaxy?
[Cufflinks transcript predictions in gtf file] + [Genome sequence in FASTA
file] ---> [FASTA file of transcript sequences]
My genome is a custom genome (not at UCSC).
---------
I'll also need to do the same thing, except my predicted
transcripts are in a Scripture bed file.
Thanks for your help!
Karen Tang :)
Plant Biology
University of Minnesota
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