Please send questions such as these to the galaxy-user mailing list (which
I've cc'd). You can find the 'Extract Genomic DNA' tool under the 'Fetch
Sequences' menu. You may also want to use tool search ('Options -> Show Tool
On Wed, Mar 2, 2011 at 2:31 PM, <din...@gwu.edu> wrote:
> Hi Jeremy,
> You have asked to extract only the exons using the 'Extract Features'
> tool but all I see here in my developer version under 'Extract Features' is
> 'Gene BED To Exon/Intron/Codon BED expander'. But the cufflinks files is a
> gtf file... I have tried to use the above tool but it returns an empty file.
> Do I need to convert my gtf to bed and then extract the exons and then use
> the 'Extract Genomic DNA' tool?
> Thank You
> Dinesh Cyanam
> George Washington University
The Galaxy User list should be used for the discussion
of Galaxy analysis and other features on the public
server at usegalaxy.org. For discussion of local Galaxy
instances and the Galaxy source code, please use the
Galaxy Development list:
To manage your subscriptions to this and other
Galaxy lists, please use the interface at: