Please send questions such as these to the galaxy-user mailing list (which
I've cc'd). You can find the 'Extract Genomic DNA' tool under the 'Fetch
Sequences' menu. You may also want to use tool search ('Options -> Show Tool


On Wed, Mar 2, 2011 at 2:31 PM, <din...@gwu.edu> wrote:

> Hi Jeremy,
> You have asked to extract only the exons using the 'Extract Features'
> tool but all I see here in my developer version under 'Extract Features' is
> 'Gene BED To Exon/Intron/Codon BED expander'. But the cufflinks files is a
> gtf file... I have tried to use the above tool but it returns an empty file.
> Do I need to convert my gtf to bed and then extract the exons and then use
> the 'Extract Genomic DNA' tool?
> Thank You
> Dinesh Cyanam
> George Washington University
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