I just read through the post at the following
I'm facing the same problem as well.
I'm desired to extract out the assembled transcript by Cufflink.
Can I know that how I link my output file from Tophat and Cufflink with the
I'm having the following output file right now:
I got a bit confusing about the explanation below:
" in order to get the sequence data for transcripts in a Cuff* GTF file, you'll
want to select for only exons (use Galaxy's 'Extract Features' tool) and then
use the resultant dataset as input to Extract."
Thanks a lot for advice.
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: