I am reading and comparing the outputs of Cuffdiff. I found there is a "tss_id"
column in "transcript FPKM tracking", "gene FPKM tracking", "TSS groups FPKM
tracking" and "CDS FPKM tracking" files. In this column, each line has a unique
label such as "TSS1001". This kind of labels also appear under "test_id" column
in "TSS groups differential expression testing" and "splicing defferential
expression testing" files. Does each of this kind label represent a unique
transcript? In other word, does each transcript has a unique label initiating
with TSS followed by numbers?
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: