On Wed, Nov 7, 2012 at 9:52 AM, Oleksandr Moskalenko <[email protected]> wrote: > > On Nov 7, 2012, at 9:47 AM, greg <[email protected]> wrote: > >> Thanks, but I'm confused. How will the cluster jobs galaxy submits >> know to use the virtual env? >> >> Or since all jobs are submitted as the galaxy user it will have the correct >> one? >> >> -Greg > > Greg, > > You can configure the environment for batch jobs in the file specified in the > "environment_setup_file =" configuration directive. >
You can do this or at least for SGE you can also use '-V' while configuring your job runner URL. drmaa://-V -q all.q/ Hope it helps, Carlos ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
