On Wed, Nov 7, 2012 at 9:52 AM, Oleksandr Moskalenko <o...@hpc.ufl.edu> wrote:
> On Nov 7, 2012, at 9:47 AM, greg <margeem...@gmail.com> wrote:
>> Thanks, but I'm confused.  How will the cluster jobs galaxy submits
>> know to use the virtual env?
>> Or since all jobs are submitted as the galaxy user it will have the correct 
>> one?
>> -Greg
> Greg,
> You can configure the environment for batch jobs in the file specified in the 
> "environment_setup_file =" configuration directive.

You can do this or at least for SGE you can also use '-V' while
configuring your job runner URL.
drmaa://-V -q all.q/

Hope it helps,
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