I'm confused if files are uploaded through the Galaxy server or through Apache?

I already set up the Apache proxy explained here:
http://wiki.galaxyproject.org/Admin/Config/Apache%20Proxy
(Does that affect uploads?)

My goal is to let users upload as large of files as possible through HTTP.


So far I just tested and upload of a 140MB file and I got this error
after a couple of minutes:

1: dsim-all-chromosome-r1.3.fasta.msg.updated.fasta
0 bytes
An error occurred running this job:Traceback (most recent call last):
File "/misc/local/galaxy/galaxy-dist/tools/data_source/upload.py",
line 384, in <module>
__main__()
File "/misc/local/galaxy/galaxy-dist/tools/data_source/upload.py",
line 359, in __main__
registry.load_datat


I see this information in the bug report:

Traceback (most recent call last):
  File "/misc/local/galaxy/galaxy-dist/tools/data_source/upload.py",
line 384, in <module>
    __main__()
  File "/misc/local/galaxy/galaxy-dist/tools/data_source/upload.py",
line 359, in __main__
    registry.load_datatypes( root_dir=sys.argv[1], config=sys.argv[2] )
  File "/misc/local/galaxy/galaxy-dist/lib/galaxy/datatypes/registry.py",
line 65, in load_datatypes
    tree = galaxy.util.parse_xml( config )
  File "/misc/local/galaxy/galaxy-dist/lib/galaxy/util/__init__.py",
line 143, in parse_xml
    tree = ElementTree.parse(fname)
  File "build/bdist.linux-x86_64/egg/elementtree/ElementTree.py", line
859, in parse
  File "build/bdist.linux-x86_64/egg/elementtree/ElementTree.py", line
576, in parse
IOError: [Errno 2] No such file or directory: '/scratch/galaxy/tmptzuSYJ'
Traceback (most recent call last):
  File "./scripts/set_metadata.py", line 118, in <module>
    __main__()
  File "./scripts/set_metadata.py", line 68, in __main__
    datatypes_registry.load_datatypes( root_dir=config_root,
config=datatypes_config )
  File "/misc/local/galaxy/galaxy-dist/lib/galaxy/datatypes/registry.py",
line 65, in load_datatypes
    tree = galaxy.util.parse_xml( config )
  File "/misc/local/galaxy/galaxy-dist/lib/galaxy/util/__init__.py",
line 143, in parse_xml
    tree = ElementTree.parse(fname)
  File "build/bdist.linux-x86_64/egg/elementtree/ElementTree.py", line
859, in parse
  File "build/bdist.linux-x86_64/egg/elementtree/ElementTree.py", line
576, in parse
IOError: [Errno 2] No such file or directory: '/scratch/galaxy/tmptzuSYJ'


Also here is what /scratch/galaxy looks like.  It seems like the file
it mentions does exist??

>ls -lh /scratch/galaxy/
total 134M
-rw-r--r-- 1 galaxy scicomp  20K Nov 13 13:35 tmpfCaiGX
-rw-r--r-- 1 galaxy scicomp  20K Nov 14 13:36 tmpM2Wclq
-rw-r--r-- 1 galaxy scicomp  20K Nov 14 13:35 tmpsIyPur
-rw-r--r-- 1 galaxy scicomp  20K Nov 16 08:48 tmptY5RaM
-rw-r--r-- 1 galaxy scicomp  20K Nov 16 08:54 tmptzuSYJ
-rw-r--r-- 1 galaxy scicomp  20K Nov 15 15:47 tmpu77PEK
-rw------- 1 galaxy scicomp  286 Nov 16 08:58 tmpykoBIq
-rw------- 1 galaxy scicomp 134M Nov 16 08:58 upload_file_data_G3eZEg

Thanks,

Greg
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