On Nov 16, 2012, at 12:22 PM, greg wrote: > I guess I'm still confused about new_file_path. > > The upload tool uses that directory to store files temporariliy until > the upload completes? And then moves it? (Will it clean up anything > placed in the new_file_path directory?)
Yes, the parameters of the upload tool are written to a temp file in this directory. It is cleaned up upon completion. A lot of other things use new_file_path, and not all of them clean themselves up, so it's a good idea to use an automated process to clean the directory. --nate > > Thanks, > > Greg > > On Fri, Nov 16, 2012 at 10:56 AM, Nate Coraor <n...@bx.psu.edu> wrote: >> On Nov 16, 2012, at 10:41 AM, greg wrote: >> >>> On Fri, Nov 16, 2012 at 10:00 AM, Nate Coraor <n...@bx.psu.edu> wrote: >>>> On Nov 16, 2012, at 9:14 AM, greg wrote: >>>> >>>> Are you running the upload tool on a cluster? >>>> >>>> --nate >>>> >>> >>> Well I have Galaxy set up to send it's jobs to SGE/qsub but I haven't >>> verified that it's doing that yet. I wanted to upload a file to test >>> on first. >>> >>> Here are the changes I made to universe_wsgi.ini after copying the sample: >>> >>> >>>> #upload1 = local:/// >>> >> >> I'm guessing that it's working, you can verify by having a look in your >> Galaxy server output/log file. new_file_path will need to be set to >> something that is accessible on the cluster. >> >> --nate >> >>> >>> -Greg >> ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
