On Fri, Nov 16, 2012 at 10:00 AM, Nate Coraor <n...@bx.psu.edu> wrote:
> On Nov 16, 2012, at 9:14 AM, greg wrote:
>
> Are you running the upload tool on a cluster?
>
> --nate
>

Well I have Galaxy set up to send it's jobs to SGE/qsub but I haven't
verified that it's doing that yet.  I wanted to upload a file to test
on first.

Here are the changes I made to universe_wsgi.ini after copying the sample:


> port = 8080
> host = 0.0.0.0
> database_connection =  mysql://user:password@devel10-db/galaxy
> database_engine_option_pool_size = 10
> database_engine_option_max_overflow = 15
> database_engine_option_pool_recycle = 7200
> database_engine_option_strategy = threadlocal
> file_path = /home/galaxy
> new_file_path = /scratch/galaxy
> job_working_directory = /home/galaxy/job_working_directory
> cluster_files_directory = /home/galaxy/pbs
> log_level = INFO
> log_events = True
> log_actions = True
> use_remote_user = True
> remote_user_maildomain = mydomain.org
> require_login = True
> allow_user_creation = True
> allow_user_deletion = False
> allow_user_impersonation = True
> allow_user_dataset_purge = True
> new_user_dataset_access_role_default_private = True
> job_manager = main
> job_handlers = main
> default_job_handlers = main
> track_jobs_in_database = True
> enable_job_recovery = True
> set_metadata_externally = True
> cleanup_job = always
> start_job_runners = drmaa
> environment_setup_file = /usr/local/galaxy/job_environment_setup_file
> default_cluster_job_runner = drmaa://-V/
> cluster_job_queue_workers = 3
> #biomart = local:///
> #encode_db1 = local:///
> #hbvar = local:///
> #microbial_import1 = local:///
> #ucsc_table_direct1 = local:///
> #ucsc_table_direct_archaea1 = local:///
> #ucsc_table_direct_test1 = local:///
> #upload1 = local:///


-Greg
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to