On Nov 16, 2012, at 12:24 PM, greg wrote:

> Also what would I look for in the log file to know if it's issuing jobs?
> 
> I started a new upload, but I don't see anything from the galaxy user
> when I run qstat.

If you follow the log, you should see messages from galaxy.jobs, and 
specifically, galaxy.jobs.runners.drmaa.

--nate

> 
> Thanks again.
> 
> Greg
> 
> On Fri, Nov 16, 2012 at 12:22 PM, greg <margeem...@gmail.com> wrote:
>> I guess I'm still confused about new_file_path.
>> 
>> The upload tool uses that directory to store files temporariliy until
>> the upload completes?  And then moves it? (Will it clean up anything
>> placed in the new_file_path directory?)
>> 
>> Thanks,
>> 
>> Greg
>> 
>> On Fri, Nov 16, 2012 at 10:56 AM, Nate Coraor <n...@bx.psu.edu> wrote:
>>> On Nov 16, 2012, at 10:41 AM, greg wrote:
>>> 
>>>> On Fri, Nov 16, 2012 at 10:00 AM, Nate Coraor <n...@bx.psu.edu> wrote:
>>>>> On Nov 16, 2012, at 9:14 AM, greg wrote:
>>>>> 
>>>>> Are you running the upload tool on a cluster?
>>>>> 
>>>>> --nate
>>>>> 
>>>> 
>>>> Well I have Galaxy set up to send it's jobs to SGE/qsub but I haven't
>>>> verified that it's doing that yet.  I wanted to upload a file to test
>>>> on first.
>>>> 
>>>> Here are the changes I made to universe_wsgi.ini after copying the sample:
>>>> 
>>>> 
>>>>> #upload1 = local:///
>>>> 
>>> 
>>> I'm guessing that it's working, you can verify by having a look in your 
>>> Galaxy server output/log file.  new_file_path will need to be set to 
>>> something that is accessible on the cluster.
>>> 
>>> --nate
>>> 
>>>> 
>>>> -Greg
>>> 


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