I run a very regular BWA mapping with a public reference genome sequence and
then I tried to do some variant analysis with both mpileup and freeBayes tools.
These jobs run just fine, but then when I went to convert these files to a .maf
format or using the bcf2vcf converter there were errors in the metadata and the
jobs couldn't run. One main error in the freeBayes output gave the exception:
"components must have same text length". I also tried to run some vcf to maf
converter from command line (python tool) on the downloaded file and also
didn't work. Any suggestion on what's wrong with the file?
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: