Hi Hiram, Thank you for support.
hgTrackDb program info: ---------------------------- -rwxr-xr-x 1 wangp astar 1445296 Nov 22 2007 hgTrackDb /home/wangp/bin/ I can not check its version for program hgTrackDb, what is its up to date version? If this is old version, how to get new one? How to rebuild trackDb tables? ......................... My email of 24 Nov > > > We find a number of track name prefix "$o" in group " Comparative > > > Genomics" of hg18(Please see attachment). Also we do not find > > > corresponding entry in file trackDb.ra, so I update the > > 'shortLabel' > > > and 'longLabel' in the table hg18.trackDb depending on latest > table > > > hg18.trackDb Information, the track names are changed too in > gonome > > > browser and do not appear track name with prefix "$o", but when I > > do > > > "make alpha DBS=hg18", the track names come repristination. ........................ By the way, where to get back 'shortLabel' and 'longLabel' of original content to overwrite my manual update in table hg18.trackDb, after "make alpha DBS=hg18". Please give advice. Thanks & Regards Wuqi -----Original Message----- From: Hiram Clawson [mailto:[email protected]] Sent: Thursday, November 26, 2009 2:56 AM To: WANG Wuqi Cc: [email protected] Subject: Re: [Genome] Track name prefix "$o" Good Morning Wuqi: What version of the hgTrackDb program are you using ? The substitution of these variables take place at the time that hgTrackDb is run to load your trackDb table. This problem should have nothing to do with the version of MySQL you use. Verify your hgTrackDb program is up to date and rebuild your trackDb tables. --Hiram WANG Wuqi wrote: > Hi Jennifer, > > Thank you for support. > > If our option is to roll back to v213, where is to download it? > because our last upgrading is from v209 to v218 directly, have not > v213. > > I already subscribed to the genome-mirror mailing list since 2 Jun > 2009, everyday I receive email about various issue message, seem never > receive Genome browser and MySQL upgrade info. > > Please check if my subscribe is correct. > > Thanks & Regards > > Wuqi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
