Respected Sir,
I am a research fellow at Indian Statistical Institute, Kolkata,
India. I am currently involved in Bio-informatics research.
Currently I am searching for chromosomal location of microRNAs.
I have found that there is two ways that gives the desired
information. First way to find required information is -> (i)
goto http://genome.ucsc.edu/cgi-bin/hgTables , (ii) put clade :
Mammal, genome : Human, assembly : Mar. 2006 (NCBI36/hg18),
group: Genes and Gene Prediction Tracks, track : sno/miRNA ,
table: wgRna .
Second one is -> i) goto
http://genome.ucsc.edu/cgi-bin/hgGateway, (ii) put clade:
Mammal, genome: Human, assembly: Mar. 2006 (NCBI36/hg18),
position: genename (user input), gene: blank, image width:
800(default).
For example : miRNA - hsa-mir-216a
1st one gives : chr = 2 , chromStart = 56069588 chromEnd = 56069698
2nd one gives: chr2:56,069,589-56,069,698.
But the 2 ways gives everything right except chromStart. If
first one gives its value equal to x then second one gives its
value equal to x+1. Please give me the information regarding
which one is correct
Thanking you,
Yours faithfully,
Tapas Bhadra
Senior Research Fellow,
ISI Kolkata
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