>> ... However, we have >> not been successful in using the Browser for viral genomes.
We have used the UCSC Genome Browser on SARS and HIV for various projects (although neither is available on our site today). Other researchers here at UCSC have dozens of bacterial and other small genomes on our browser software. -Galt On Fri, 12 Dec 2008, Brooke Rhead wrote: > Hello Paul, > > We primarily focus on displaying vertebrate genomes on the UCSC Genome > Browser. However, the Genome Browser source code is free for academic > and non-profit purposes (commercial use requires a license). > Instructions for creating a mirror site of the Genome Browser are here: > > http://genome.ucsc.edu/admin/mirror.html > > Instructions for using your own set of databases on your mirror are here: > http://genome.ucsc.edu/FAQ/FAQlicense#license4 > > Alternatively, you might try NCBI: > > http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome > http://www.ncbi.nlm.nih.gov/genomes/GenomesHome.cgi?taxid=10239 > > I hope this is helpful. > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > On 12/12/08 11:50, Paul Lieberman wrote: >> Dear UCSC >> >> We are trying to use Solexa ChIP-Seq on cellular and viral genomes. >> We have been successful in using the UCSC Genome Browser for mapping >> back our sequences to the human and yeast genomes. However, we have >> not been successful in using the Browser for viral genomes. >> >> We are also very interested in the Epstein-Barr Virus Genome (Human >> Herpesvirus 4: LOCUS AJ507799 171823 bp >> DNA circular VRL 15-MAY-2008 >> DEFINITION Human herpesvirus 4 complete wild type genome. >> ACCESSION AJ507799 >> >> >> Is it possible for us or for the UCSC Genomics Group to make this >> genome available on the Genome Browser, similar to other organisms. >> >> Please let me know if I this is possible to do from our end, or if it >> can be set up at the UCSC Home site. >> >> Thank you for any help or information you can provide on this >> problem. Please feel free to contact me if you need any >> clarification or additional support from our end. >> >> >> Sincerely >> >> Paul Lieberman >> >> >> Paul Lieberman, Ph.D. >> Professor, Gene Regulation Group >> The Wistar Institute >> 3601 Spruce St >> Philadelphia, PA 19104-4265 >> >> Phone: 215-898-9491 >> Fax: 215-898-0663 >> Email: [email protected] >> >> >> _______________________________________________ >> Genome maillist - [email protected] >> http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
