Hi Edouard, Using a script against the Get DNA web tool is not such a good idea. Since you are already done, this advice is for next time. Instead, load up the coordinates of the data you want into a BED formatted file and run a query against the Assembly track in the Table browser. Or, if you are pulling entire chromosomes, use ftp. Instructions for both are in my previous response.
Here is a link to the kent source utilities with descriptions of what they do. "faFrag" is a good place to start if you extract fasta formatted data. After compiling, type the program name(s) for more details concerning usage. http://genomewiki.cse.ucsc.edu/index.php/Kent_source_utilities Jennifer Jackson UCSC Genome Bioinformatics Group Edouard Henrion wrote: > Hi Jennifer, > > Thanks for your quick reply ! > > What we actually do here is that we use a script witch act as a user > agent to query DNA sequences from your website using your "Get DNA" tool. > > So, now I have downloaded entire chromosomes files and Genome Browser > source code and executables, I am not sure about the right executable > to use... Do you know witch is the executable that retrieve DNA > sequence from a given genomic position ? > > Thank a lot. > > Édouard > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
