Dear Yong Zhang
We will have the sacCer2 assembly on our public site
fairly soon,
but please realize that we have many conflicting demands
in our
release schedule, not the least of which is the new human
assembly,
which must receive our primary focus.
In the meantime, please use the assembly on our test site,
genome-test.cse.ucsc.edu
bearing in mind that it has not been fully processed by
our
Quality Assurance effort.
best wishes and thanks for your interest,
--b0b kuhn
ucsc genome bioinformatics group
On Tue, 26 May 2009 11:16:31 -0500
"Yong Zhang" <[email protected]> wrote:
> Hi Ann,
>
> Now three weeks passed. I am just wondering whether you
>guys could release new assembly very soon.
>
> Thanks for your reply ahead.
>
> Best regards,
> -------------------------------------------------------------
> Yong Zhang
> Ph.D, Research Scholar
> Manyuan Long's Lab
> University of Chicago
>
>>-------------------------------------------------------------
>>From: Ann Zweig
>>Time: 2009-05-04 11:49:59
>>To: pkuonline genome
>>Subject: Re: [Genome] data release of sacCer2
>
>>Hello Yong Zhang,
>>
>>The sacCer2 assembly and tracks are in the final stages
>>of our quality assurance
>>process. Expect to see it on the public website in a
>>couple of weeks.
>>
>>Regards,
>>
>>----------
>>Ann Zweig
>>UCSC Genome Bioinformatics Group
>>http://genome.ucsc.edu
>>
>>
>>
>>pkuonline wrote:
>>> Dear Sir or Madam,
>>>
>>> The current stable version of yeast, sacCer1, is pretty
>>>old, since it was released six years ago. I noticed the
>>>updated version sacCer2 is already being developed based
>>>on the UCSC test website. I checked the document of
>>>sacCer2, "kent/src/hg/makeDb/doc/sacCer2.txt". It seems
>>>you guys already gets almost all things done, including
>>>new SGD genome assembly, new phastCons score, new gene
>>>annotation (both Ensembl and SGD), new EST/mRNA mapping
>>>and many others. As said above, since sacCer1 is too old,
>>>these new information is very helpful for my project. So
>>>I am just wondering when you could release this
>>>information. As of now, UCSC ftp site only has EST/mRNA
>>>mapping beds,
>>>ftp://hgdownload.cse.ucsc.edu/goldenPath/sacCer2/ .
>>>
>>> Thanks for your reply ahead.
>>>
>>> Best regards,
>>> -------------------------------------------------------------
>>> Yong Zhang
>>> Ph.D, Research Scholar
>>> Manyuan Long's Lab
>>> University of Chicago
>>>
>>> _______________________________________________
>>> Genome maillist - [email protected]
>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome
>
>
>
>
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
