Hi Robert, Thanks for your rapid reply.
I notice that there is not much things on FTP for download, i.e., hgdownload.cse.ucsc.edu:/goldenPath/sacCer2/ . I am wondering whether you can put some data there, namely, SGD gene track, the genome sequences and conservation score, which are important for my current project. A million thanks for your efforts! Best regards, ------------------------------------------------------------- Yong Zhang Ph.D, Research Scholar Manyuan Long's Lab University of Chicago >------------------------------------------------------------- >From: Robert Kuhn >Time: 2009-05-26 12:53:29 >To: zhangy; Ann Zweig genome >Subject: Re: [Genome] data release of sacCer2 >Dear Yong Zhang > >We will have the sacCer2 assembly on our public site >fairly soon, >but please realize that we have many conflicting demands >in our >release schedule, not the least of which is the new human >assembly, >which must receive our primary focus. > >In the meantime, please use the assembly on our test site, > > genome-test.cse.ucsc.edu > >bearing in mind that it has not been fully processed by >our >Quality Assurance effort. > >best wishes and thanks for your interest, > > --b0b kuhn > ucsc genome bioinformatics group > > >On Tue, 26 May 2009 11:16:31 -0500 > "Yong Zhang" <[email protected]> wrote: >> Hi Ann, >> >> Now three weeks passed. I am just wondering whether you >>guys could release new assembly very soon. >> >> Thanks for your reply ahead. >> >> Best regards, >> ------------------------------------------------------------- >> Yong Zhang >> Ph.D, Research Scholar >> Manyuan Long's Lab >> University of Chicago >> >>>------------------------------------------------------------- >>>From: Ann Zweig >>>Time: 2009-05-04 11:49:59 >>>To: pkuonline genome >>>Subject: Re: [Genome] data release of sacCer2 >> >>>Hello Yong Zhang, >>> >>>The sacCer2 assembly and tracks are in the final stages >>>of our quality assurance >>>process. Expect to see it on the public website in a >>>couple of weeks. >>> >>>Regards, >>> >>>---------- >>>Ann Zweig >>>UCSC Genome Bioinformatics Group >>>http://genome.ucsc.edu >>> >>> >>> >>>pkuonline wrote: >>>> Dear Sir or Madam, >>>> >>>> The current stable version of yeast, sacCer1, is pretty >>>>old, since it was released six years ago. I noticed the >>>>updated version sacCer2 is already being developed based >>>>on the UCSC test website. I checked the document of >>>>sacCer2, "kent/src/hg/makeDb/doc/sacCer2.txt". It seems >>>>you guys already gets almost all things done, including >>>>new SGD genome assembly, new phastCons score, new gene >>>>annotation (both Ensembl and SGD), new EST/mRNA mapping >>>>and many others. As said above, since sacCer1 is too old, >>>>these new information is very helpful for my project. So >>>>I am just wondering when you could release this >>>>information. As of now, UCSC ftp site only has EST/mRNA >>>>mapping beds, >>>>ftp://hgdownload.cse.ucsc.edu/goldenPath/sacCer2/ . >>>> >>>> Thanks for your reply ahead. >>>> >>>> Best regards, >>>> ------------------------------------------------------------- >>>> Yong Zhang >>>> Ph.D, Research Scholar >>>> Manyuan Long's Lab >>>> University of Chicago >>>> >>>> _______________________________________________ >>>> Genome maillist - [email protected] >>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> >> >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
