Hi Pete, You are correct, the data is misleading. In fact, for this table, only the first four columns of data should be used (ignore the last 4).
There was a processing reason for the inclusion of the extra padded data that no longer exists. We are making plans to reformat the table to be only the first four columns sometime in the future. Thanks for letting us know about the issue, Jennifer Jackson UCSC Genome Bioinformatics Group Pete Shepard wrote: > And the real coordinates: > > 590 chr1 751452 751453 p.79854.1 1000 + 751452 > 751453 > 592 chr1 1007065 1007066 p.54991.1 1000 + 1007065 > 1007066 > 593 chr1 1111106 1111107 p.254173.1 1000 + 1111106 > 1111107 > > Thank you... > > On Tue, Jun 16, 2009 at 12:09 PM, Pete Shepard <[email protected]>wrote: > > >> chr1 >> >> >> On Tue, Jun 16, 2009 at 12:08 PM, Pete Shepard >> <[email protected]>wrote: >> >> >>> Dear Genome Guides, >>> >>> Apologies here are the coordinates in a more readable form >>> >>> chr1751452751453chr1 751452 >>> >>> I am looking at your reporter poly-a track and have a question. From your >>> sample rows in the describe table schema option, there are a number of >>> poly-a sites that ar reported as being in the sense (+) strand however >>> the >>> transcript is in the antisense(-) orientation? The first two examples have >>> this inconsistency and the third is correct? Any help is greatly >>> appreciated. >>> >>> >>> On Tue, Jun 16, 2009 at 11:54 AM, Pete Shepard >>> <[email protected]>wrote: >>> >>> >>>> Dear Genome Guides, >>>> >>>> I am looking at your reporter poly-a track and have a question. From your >>>> sample rows in the describe table schema option, there are a number of >>>> poly-a sites that ar reported as being in the sense (+) strand however >>>> the >>>> transcript is in the antisense(-) orientation? The first two examples >>>> have >>>> this inconsistency and the third is correct? Any help is greatly >>>> appreciated. >>>> >>>> 590chr1751452751453p.79854.11000+751452751453 >>>> 592chr110070651007066p.54991.1 >>>> 1000+10070651007066 593chr111111061111107p.254173.11000+11111061111107 >>>> _______________________________________________ >>>> Genome maillist - [email protected] >>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>>> >>>> >>> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
