Hello Attila,

Here is a previously answered mailing list question on how to do batch blat 
analysis:

https://lists.soe.ucsc.edu/pipermail/genome/2006-June/011024.html

Also, we are currently doing some testing on our BLAT servers, in the case that 
you were seeing some errors.  If so, please do let us know.

Kayla Smith
UCSC Genome Bioinformatics Group

----- "Attila Szanto" <[email protected]> wrote:

> I wanted to run a blat analysis on my sequences to get the positions 
> 
> and the system did not let me to do it. So how is batch analysis  
> performed then?
> Thanks,
> Attila Szanto
> 
> 
> 
> 
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