Hi Chirag, Unfortunately, the liftOver tool will not work in this case. The next zebrafish assembly, danRer6 (Zv8), will have a Conservation track and so we suggest that you wait for its release.
When the new zebrafish assembly is published on the UCSC Browser, the assembly will be added to the Release Log (http://genome.ucsc.edu/goldenPath/releaseLog.html) and a statement will be made to the genome-announce mailing list (https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce). Please check the Release Log or subscribe to the low-volume genome-announce list for email notification of releases. <https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce.> Please don't hesitate to contact the mail list again if you require further assistance. Katrina Learned UCSC Genome Bioinformatics Group [email protected] wrote: > Dear all, > I would like to know how to liftover the Multiple Alignment from one > assembly to another. > > I downloaded the > "Conservation scores for alignments of 6 vertebrate genomes with > zebrafish", from UCSC, which is Zv6 version. > > I would like to convert this to Zv7, as no MSA file is there on UCSC. > > Any suggestions on how to do this ? > > Thankyou for your help in advance ! > > regards > Chirag Nepal > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
