Dear Katrina, Thank you for your reply. Any idea about the tentative date, when the Zv8 assembly will be released in UCSC.
Thanks for your help ! regards Chirag Quoting Katrina Learned <[email protected]>: > Hi Chirag, > > Unfortunately, the liftOver tool will not work in this case. The next > zebrafish assembly, danRer6 (Zv8), will have a Conservation track and > so we suggest that you wait for its release. > > When the new zebrafish assembly is published on the UCSC Browser, the > assembly will be added to the Release Log > (http://genome.ucsc.edu/goldenPath/releaseLog.html) and a statement > will be made to the genome-announce mailing list > (https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce). Please > check the Release Log or subscribe to the low-volume genome-announce > list for email notification of releases. > <https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce.> > > Please don't hesitate to contact the mail list again if you require > further assistance. > > Katrina Learned > UCSC Genome Bioinformatics Group > > > [email protected] wrote: >> Dear all, >> I would like to know how to liftover the Multiple Alignment from >> one assembly to another. >> >> I downloaded the >> "Conservation scores for alignments of 6 vertebrate genomes with >> zebrafish", from UCSC, which is Zv6 version. >> >> I would like to convert this to Zv7, as no MSA file is there on UCSC. >> >> Any suggestions on how to do this ? >> >> Thankyou for your help in advance ! >> >> regards >> Chirag Nepal >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
