Hi all,
I just uploaded some of our new data to our local UCSC mirror (which is
locally accessible only). The data is in BAM format, and is hosted in
another server locally which, again is visible only locally (so
unfortunately I can not test the same BAM files with UCSC Browser). The
problem is I can not see any data in the track, just blank. There are
two points:
- Our local mirror works fine with other dataset (in BAM format)
- The pipeline analysis we use (to produce BAM) using samtools, and
all other dataset we have run also use the same pipeline
That means there is no difference between this BAM dataset and other
dataset we have done so far. I also use samtools to view the BAM files,
and they look fine to me.
So any body has idea why this suddenly happened? What "quick and easy"
things should we do to debug the situation before we upload our BAM
files to somewhere outside to test with the real UCSC?
Thank you very much,
D.
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
