Hi,
I myself finally found a solution. Go to the page of genome
browser (not table browser), paste your genomic interval in the field
of "position or search term", then click "submit" to make the view
located exactly in your input interval. Click "DNA" between "PCR" and
"Convert" on the top, then use the "extended case/color options" to
set the case/color to indicate the exon/intron information.
The shortage is that we cannot perform this in a batch.
2010/11/19 Zhi-Qiang Ye <[email protected]>:
> Dear all,
>
> I uploaded the genomic intervals that I am interested in as a
> custom track, and some
> genes partially overlap these intervals. These overlaping regions
> (with gene structures)
> are what I needed, but I found that I can only obtain the sequences of
> the whole genes.
>
> Is there any solutions for obtain the sequenes of overlapping
> reigons, and the gene
> structures still remain (e.g. exon in upper case)?
>
> Thanks in advance.
>
> Regards,
> ZQ
>
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