Good Morning Nicholas: Please note the general discussion of the organization of the human assembly on the gateway page: http://genome.ucsc.edu/cgi-bin/hgGateway?db=hg19
In particular, in the section: "Chromosome naming scheme" See also: http://vega.sanger.ac.uk/info/data/MHC_Homo_sapiens.html http://www.ucl.ac.uk/cancer/research-groups/medical-genomics/past_projects/MHC.shtml You can find the mapped locations of the haplotypes in the genome browser in the track: "GRC Patch Release" GRCh37 alternate sequences, haplotypes and reference sequence patches --Hiram Nicholas Price wrote: > Hi > > When I run a query in BLAT I get the following results > > 655 0 0 0 0 0 0 0 - hg19 > 655 0 655 chr6_qbl_hap6 4611984 160157 160812 1 655, > 0, 160157, > 655 0 0 0 0 0 0 0 - hg19 > 655 0 655 chr6 171115067 > 28856756 28857411 1 655, 0, 28856756, > > Whats the difference between "chr6_qbl_hap6" and "chr6"? Is chr6 > 28856756 28857411 the location in the genome? > > Thank you > > Nicholas _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
