1. What is the Query type RNA? How it differs from DNA? It seems to be available in standalone but not on web.
2. http://genome.ucsc.edu/goldenPath/help/blatSpec.html mentions Mapping full length mRNAs to the genome in the same species -ooc=11.ooc -fine -q=rna So what is the best query type for mRNA query on the web? 3. I read the response in the Archives Re: BLAT - The meaning of translated DNA/RNA Date: 2010-04-19 but still not clear to me translated RNA and translated DNA types. I understand one is 3 frame translation and other is 6 frame translation. What is meant by "stranded" and "no strand info" mentioned in the response. When I run mRNA (cDNA) sequence on the web, I do get strand information for both types. 4. I read FAQs. But it is still not clear to me what are the exact parameters used on the web. How do I get that list? Thanks, Medha _____________________________ Medha Bhagwat, PhD Informationist/Bioinformatics Specialist NIH Library National Institutes of Health Building 10, Room 1L13F 10 Center Drive Bethesda, Maryland 20892-1150 T. 301-496-2185 F. 301-402-0254 E. [email protected] http://nihlibrary.nih.gov http://nihlibrary.nih.gov/bioinformatics _____________________________ Amazing Research. Amazing Help. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
