I am trying to use BLAT to blast short reads(FASTQ) from the NCBI, SRA with my custom reference sequence(fasta format) to check the hits and then design primers. I am bit confused how to use the program efficiently. I am planning to read the help to find solutiosn. I would really appreciate, if you can help me with the above situation.
Thank you, Shakuntala Fathepure Postdoc Dept. of Botany Oklahoma State University Stillwater, OK 74078 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
