Hi Vanessa Kirkup Swing, Could you give me the Epigenome Broswer's contact mail? Because I cannot get their contact.
Thanks & Regards Wuqi -----Original Message----- From: Vanessa Kirkup Swing [mailto:[email protected]] Sent: Friday, March 04, 2011 8:23 AM To: WANG Wuqi Cc: Mary Goldman; Hiram Clawson; [email protected] Subject: Re: [Genome] How to configure a special track like "Roadmap Integrative Epigenomes Tracks" Dear Wuqi, Please take a look at the trackDb README located in: kent/src/hg/makeDb/trackDb The track that you are trying to build is a composite track. If you want the exact track, you might want to contact the Epigenome Broswer and see if you can get their trackDb entries. Hope this helps! Please contact the mailing list if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "WANG Wuqi" <[email protected]> To: "Mary Goldman" <[email protected]>, "Hiram Clawson" <[email protected]>, "[email protected]" <[email protected]> Cc: "WANG Wuqi" <[email protected]> Sent: Wednesday, March 2, 2011 11:07:51 PM Subject: Re: [Genome] How to configure a special track like "Roadmap Integrative Epigenomes Tracks" Hi Mary and Hiram, We have 2 UCSC genome browser mirror sites(one for internal, another for public: http://genome.gis.a-star.edu.sg/) , it has been working for many years. Also we uploaded our data to build permanent track, composite track and matrix track. Now we want to build a track like "Roadmap Integrative Epigenomes Tracks", it is in site: http://www.epigenomebrowser.org/cgi-bin/hgTracks?hgsid=5198&clade=mammal&org=Human&db=hg19&position=chr21%3A33%2C031%2C597-33%2C041%2C570&hgt.suggest=&pix=800&Submit=submit this track has 3 layers (see attachment), but I do not know how to configuration such a track. Please give me some advice Thanks & Regards Wuqi From: Mary Goldman [mailto:[email protected]] Sent: Wednesday, March 02, 2011 6:42 AM To: WANG Wuqi Cc: 'Hiram Clawson'; '[email protected]' Subject: Re: [Genome] How to configure a special track like "Roadmap Integrative Epigenomes Tracks" Hi Wugi, Unfortunately, we are not sure when this will be a feature of custom tracks. It is possible to add this to a track if you are creating one on a mirror. For more information on that please see this previously answered mailing list question: https://lists.soe.ucsc.edu/pipermail/genome-mirror/2010-July/001971.html More information about building a mirror from the source code (http://hgdownload.cse.ucsc.edu/admin/jksrc.zip) can be found here: http://genome.ucsc.edu/admin/jk-install.html I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 2/28/11 11:02 PM, WANG Wuqi wrote: Dear Hiram, We want to build a track like "Roadmap Integrative Epigenomes Tracks" in the group "Roadmap Integrative Epigenomes" for hg19. Its URL is, http://www.epigenomebrowser.org/cgi-bin/hgTracks?hgsid=5198&clade=mammal&org=Human&db=hg19&position=chr21%3A33%2C031%2C597-33%2C041%2C570&hgt.suggest=&pix=800&Submit=submit This track has 3 layers, the 1st layer is the track name, the 2nd has a few link (here is 3 link, The 3rd is a matrix tracks. Please see attach file and give me some advice Thanks & Regards Wuqi _______________________________________________ Genome maillist - [email protected]<mailto:[email protected]> https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
