Please use the standard build scripts in src/product/scripts/ Do not run a make in the trackDb hierarchy in the source tree. If you have locally loaded track tables, following the instructions in src/product/README.trackDb
Please following the install instructions in src/product/README.* and src/product/scripts/README A refresh of the genome browser is merely a repeat of the install instructions. rsync tables from UCSC, fetch the source tree and build it. The scripts I mention above can perform these steps. Please follow the instructions. --Hiram ----- Original Message ----- From: "WANG Wuqi" <[email protected]> To: "Hiram Clawson" <[email protected]>, "[email protected]" <[email protected]> Cc: "WANG Wuqi" <[email protected]> Sent: Thursday, March 10, 2011 1:33:42 AM Subject: Upgrade UCSC genome browser Dear Hiram, We have a UCSC genome browser mirror site with 5.1.54 MySQL Community Server (GPL)). Today I upgraded this genome browser from version 218 to 247. I encounter the following problems: (1) I see this browser version still is v218 instead of new version v247 (see attachment - red cycle) (2) Very slow when open any library, like hg18, mm9 etc I see the state 'Sending data' or 'checking permissions' by MySQL 'processlist' (3) After uploading our data, to compile to get below error message: $ cd /home/wangp/jksrc/kent/src/hg/makeDb/trackDb $ make alpha DBS=hg18 find . -type l -exec rm {} \; git pull make: git: Command not found make: *** [alpha] Error 127 Please give me some advice Thanks & Regards Wuqi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
