Hi Wuqi, It looks like the Epigenomics Browser is part of the Roadmap Epigenomics Project. I was able to find their website, www.roadmapepigenomics.org, and see on their Participants webpage (http://www.roadmapepigenomics.org/participants) that Baylor College of Medicine is the Data Analysis and Coordination Center. A contact person is listed, I suggest you try to contact them to find out who is running the browser.
Sorry we don't have more information to provide. Katrina Learned UCSC Genome Bioinformatics Group WANG Wuqi wrote, On 03/03/11 18:51: > Hi Vanessa Kirkup Swing, > > Could you give me the Epigenome Broswer's contact mail? > Because I cannot get their contact. > > Thanks & Regards > > Wuqi > > > -----Original Message----- > From: Vanessa Kirkup Swing [mailto:[email protected]] > Sent: Friday, March 04, 2011 8:23 AM > To: WANG Wuqi > Cc: Mary Goldman; Hiram Clawson; [email protected] > Subject: Re: [Genome] How to configure a special track like "Roadmap > Integrative Epigenomes Tracks" > > Dear Wuqi, > > Please take a look at the trackDb README located in: > kent/src/hg/makeDb/trackDb > > The track that you are trying to build is a composite track. > > If you want the exact track, you might want to contact the Epigenome Broswer > and see if you can get their trackDb entries. > > Hope this helps! Please contact the mailing list if you have further > questions. > > Vanessa Kirkup Swing > UCSC Genome Bioinformatics Group > > ----- Original Message ----- > From: "WANG Wuqi" <[email protected]> > To: "Mary Goldman" <[email protected]>, "Hiram Clawson" <[email protected]>, > "[email protected]" <[email protected]> > Cc: "WANG Wuqi" <[email protected]> > Sent: Wednesday, March 2, 2011 11:07:51 PM > Subject: Re: [Genome] How to configure a special track like "Roadmap > Integrative Epigenomes Tracks" > > Hi Mary and Hiram, > > We have 2 UCSC genome browser mirror sites(one for internal, another for > public: http://genome.gis.a-star.edu.sg/) > , it has been working for many years. Also we uploaded our data to build > permanent track, composite track and matrix track. > > Now we want to build a track like "Roadmap Integrative Epigenomes Tracks", it > is in site: > > > > http://www.epigenomebrowser.org/cgi-bin/hgTracks?hgsid=5198&clade=mammal&org=Human&db=hg19&position=chr21%3A33%2C031%2C597-33%2C041%2C570&hgt.suggest=&pix=800&Submit=submit > > this track has 3 layers (see attachment), but I do not know how to > configuration such a track. > > Please give me some advice > > > Thanks & Regards > > Wuqi > > > > > > > From: Mary Goldman [mailto:[email protected]] > Sent: Wednesday, March 02, 2011 6:42 AM > To: WANG Wuqi > Cc: 'Hiram Clawson'; '[email protected]' > Subject: Re: [Genome] How to configure a special track like "Roadmap > Integrative Epigenomes Tracks" > > Hi Wugi, > > Unfortunately, we are not sure when this will be a feature of custom tracks. > It is possible to add this to a track if you are creating one on a mirror. > For more information on that please see this previously answered mailing list > question: > > https://lists.soe.ucsc.edu/pipermail/genome-mirror/2010-July/001971.html > > More information about building a mirror from the source code > (http://hgdownload.cse.ucsc.edu/admin/jksrc.zip) can be found here: > > http://genome.ucsc.edu/admin/jk-install.html > > I hope this information is helpful. Please feel free to contact the mail > list again if you require further assistance. > > Best, > Mary > ------------------ > Mary Goldman > UCSC Bioinformatics Group > > On 2/28/11 11:02 PM, WANG Wuqi wrote: > > Dear Hiram, > > > > We want to build a track like "Roadmap Integrative Epigenomes Tracks" > > in the group "Roadmap Integrative Epigenomes" for hg19. Its URL is, > > > > http://www.epigenomebrowser.org/cgi-bin/hgTracks?hgsid=5198&clade=mammal&org=Human&db=hg19&position=chr21%3A33%2C031%2C597-33%2C041%2C570&hgt.suggest=&pix=800&Submit=submit > > > > > > This track has 3 layers, the 1st layer is the track name, the 2nd has a few > link (here is 3 link, > > The 3rd is a matrix tracks. > > > > Please see attach file and give me some advice > > > > > > Thanks & Regards > > > > Wuqi > > > > > > _______________________________________________ > > Genome maillist - [email protected]<mailto:[email protected]> > > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
