Dear Professor,
Can I know that how to extract the information (such as chromosome number,
position start and position ) of human hg19 3'-UTR, 5'-UTR, rRNA, tRNA from
UCSC Genome Browser?
I got extract rRNA and tRNA by using the following method:
* Select "All Tables" from the group drop-down list
* Select the "rmsk" table from the table drop-down list
* Choose "GTF" as the output format / Choose "Sequence" as the output
format
* Type a filename in "output file" so your browser downloads the result
* Click "create" next to filter
* Next to "repClass," type rRNA
* Next to free-form query, select "OR" and type repClass = "tRNA"
* Click submit on that page, then get output on the main page
However, when I check the position of rRNA and tRNA in GTF format and Sequence
format.
It shown difference nucleotide.
Can I know how to solve this issue?
I just wanna to make sure the position of rRNA and tRNA in GTF format is tally
with the position and chromosome shown in Sequence format.
Can I know how to get all the info regarding human hg19 3'-UTR, 5'-UTR, rRNA,
tRNA from UCSC Genome Browser?
Many thanks for any advice.
best regards
Edge
Research Student
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