Dear justin I checked what you said,yes,both of them(trr and xtc files) were completely done as I wanted in my mdp file.
what is your points of view? On Sun, Nov 7, 2010 at 9:15 PM, Justin A. Lemkul <[email protected]> wrote: > > > Vitaly Chaban wrote: > >> Did you try to re-run your trajectory? Does the problem persist then? >> >> >> > Perhaps the faster solution would be to see what gmxcheck says about the > trajectory. > > -Justin > > > >> I have a trajectory with 20000 frames. >>> i want to separate just 1000 last frames of it in pdb formt and 1000 >>> first >>> frames too. >>> I entered this command: >>> trjconv -f mmm.trr -o nnn.pdb -s lll.tpr -b 800 -e 1000 >>> >>> actually my total time is 1000 ps. >>> the process was not done completely! >>> when I delete -e option it is done completely but the the result file is >>> 0 >>> byte,then i can not earn anything. >>> what is the problem? >>> >>> thanks in advance for your comments >>> Mohsen >>> >> > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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