It is surprising!, Because I used -sep option But it made 20 pdb file separately with 0 byte!
On Mon, Nov 8, 2010 at 11:26 AM, mohsen ramezanpour < [email protected]> wrote: > of course I could generate a pdb file without -b and -e options,but I don't > want it. > > besides I did the same process with xtc file and I resulted in a 0 byte > file :( > > > > On Mon, Nov 8, 2010 at 11:21 AM, mohsen ramezanpour < > [email protected]> wrote: > >> Dear justin >> >> I checked what you said,yes,both of them(trr and xtc files) were >> completely done as I wanted in my mdp file. >> >> what is your points of view? >> >> >> On Sun, Nov 7, 2010 at 9:15 PM, Justin A. Lemkul <[email protected]> wrote: >> >>> >>> >>> Vitaly Chaban wrote: >>> >>>> Did you try to re-run your trajectory? Does the problem persist then? >>>> >>>> >>>> >>> Perhaps the faster solution would be to see what gmxcheck says about the >>> trajectory. >>> >>> -Justin >>> >>> >>> >>>> I have a trajectory with 20000 frames. >>>>> i want to separate just 1000 last frames of it in pdb formt and 1000 >>>>> first >>>>> frames too. >>>>> I entered this command: >>>>> trjconv -f mmm.trr -o nnn.pdb -s lll.tpr -b 800 -e 1000 >>>>> >>>>> actually my total time is 1000 ps. >>>>> the process was not done completely! >>>>> when I delete -e option it is done completely but the the result file >>>>> is 0 >>>>> byte,then i can not earn anything. >>>>> what is the problem? >>>>> >>>>> thanks in advance for your comments >>>>> Mohsen >>>>> >>>> >>> -- >>> ======================================== >>> >>> Justin A. Lemkul >>> Ph.D. Candidate >>> ICTAS Doctoral Scholar >>> MILES-IGERT Trainee >>> Department of Biochemistry >>> Virginia Tech >>> Blacksburg, VA >>> jalemkul[at]vt.edu | (540) 231-9080 >>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >>> >>> ======================================== >>> >>> -- >>> gmx-users mailing list [email protected] >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the www >>> interface or send it to [email protected]. >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >> >> >
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