of course I could generate a pdb file without -b and -e options,but I don't want it.
besides I did the same process with xtc file and I resulted in a 0 byte file :( On Mon, Nov 8, 2010 at 11:21 AM, mohsen ramezanpour < [email protected]> wrote: > Dear justin > > I checked what you said,yes,both of them(trr and xtc files) were completely > done as I wanted in my mdp file. > > what is your points of view? > > > On Sun, Nov 7, 2010 at 9:15 PM, Justin A. Lemkul <[email protected]> wrote: > >> >> >> Vitaly Chaban wrote: >> >>> Did you try to re-run your trajectory? Does the problem persist then? >>> >>> >>> >> Perhaps the faster solution would be to see what gmxcheck says about the >> trajectory. >> >> -Justin >> >> >> >>> I have a trajectory with 20000 frames. >>>> i want to separate just 1000 last frames of it in pdb formt and 1000 >>>> first >>>> frames too. >>>> I entered this command: >>>> trjconv -f mmm.trr -o nnn.pdb -s lll.tpr -b 800 -e 1000 >>>> >>>> actually my total time is 1000 ps. >>>> the process was not done completely! >>>> when I delete -e option it is done completely but the the result file is >>>> 0 >>>> byte,then i can not earn anything. >>>> what is the problem? >>>> >>>> thanks in advance for your comments >>>> Mohsen >>>> >>> >> -- >> ======================================== >> >> Justin A. Lemkul >> Ph.D. Candidate >> ICTAS Doctoral Scholar >> MILES-IGERT Trainee >> Department of Biochemistry >> Virginia Tech >> Blacksburg, VA >> jalemkul[at]vt.edu | (540) 231-9080 >> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >> >> ======================================== >> >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > >
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