mohsen ramezanpour wrote:
It is surprising!,
Because I used -sep option But it made 20 pdb file separately with 0 byte!
Do you have sufficient disk space? The only way I can see that you would get
files of zero bytes are:
1. Not enough space on the disk
2. The frames specified do not exist
-Justin
On Mon, Nov 8, 2010 at 11:26 AM, mohsen ramezanpour
<[email protected] <mailto:[email protected]>> wrote:
of course I could generate a pdb file without -b and -e options,but
I don't want it.
besides I did the same process with xtc file and I resulted in a 0
byte file :(
On Mon, Nov 8, 2010 at 11:21 AM, mohsen ramezanpour
<[email protected] <mailto:[email protected]>>
wrote:
Dear justin
I checked what you said,yes,both of them(trr and xtc files) were
completely done as I wanted in my mdp file.
what is your points of view?
On Sun, Nov 7, 2010 at 9:15 PM, Justin A. Lemkul
<[email protected] <mailto:[email protected]>> wrote:
Vitaly Chaban wrote:
Did you try to re-run your trajectory? Does the problem
persist then?
Perhaps the faster solution would be to see what gmxcheck
says about the trajectory.
-Justin
I have a trajectory with 20000 frames.
i want to separate just 1000 last frames of it in
pdb formt and 1000 first
frames too.
I entered this command:
trjconv -f mmm.trr -o nnn.pdb -s lll.tpr -b 800
-e 1000
actually my total time is 1000 ps.
the process was not done completely!
when I delete -e option it is done completely but
the the result file is 0
byte,then i can not earn anything.
what is the problem?
thanks in advance for your comments
Mohsen
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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