#253: obesity survey REDCap tracker and tools
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Reporter: bokov | Owner: huhickman
Type: enhancement | Status: assigned
Priority: major | Milestone: obesity-survey-def
Component: data-sharing | Resolution:
Keywords: | Blocked By:
Blocking: 254 |
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Comment (by lv):
MCRF effort to try to get the python scripts to work:
Ran into a few catches right away that were resolved:
• Lines that had ‘except KeyError, e:’ had to be switch to ‘except
KeyError as e:’. This seemed to be related to changes in the version of
python.
• It couldn’t find ‘ConfigParser’. Apparently in the new version of
Python this was switched to ‘configparser’.
• There are a few dependent packages that are not part of the vanilla
python that I had to install. They were docopt and fuzzywuzzy.
• I get a warning about installing python-Levenshtein, which I have, but
the warning still comes up. I think this can be ignored because it’s just
a warning.
Then ran into this error:
Traceback (most recent call last):
File "tracker_load.py", line 38, in <module>
import address_util.usps as usps
File "C:\Users\larosee\Desktop\i2b2\bos_uthscsa-survey_tracker-
9f11111d6c95\bo
s_uthscsa-survey_tracker-9f11111d6c95\address_util\usps.py", line 81, in
<module
>
input, long, short = f.strip().split('|')
ValueError: need more than 1 value to unpack
Got past the error by hardcoding the filepath for the file it was trying
to process for that line. What was happening was instead of parsing the
abbreviations.txt it was starting to parse the python script in that
directory.
Now we're stuck on the following error:
Traceback (most recent call last):
File "tracker_load.py", line 1588, in <module>
_trusted_main(arguments)
File "tracker_load.py", line 1553, in _trusted_main
from __builtin__ import open as openrd
ImportError: No module named '__builtin__'
We're wondering:
1. If this should be tracked on this ticket; not sure if any other sites
will need to make similiar adjustment?
2. If it would be most efficient for Eric from MCRF and Angela to work
through some of these via email/screensharing?
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/253#comment:17>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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