guix_mirror_bot pushed a commit to branch master
in repository guix.
commit e74296af1ca281fc55cf21a5247079dfcab79ff9
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Fri Feb 20 10:21:10 2026 +0100
gnu: r-hdf5dataframe: Update to 0.99.3-1.61c52cb.
* gnu/packages/bioinformatics.scm (r-hdf5dataframe): Update to
0.99.3-1.61c52cb.
[propagated-inputs]: Add r-h5mread.
[synopsis]: Update to what upstream provides.
Change-Id: Ie46ac432d6635a4aa824f17b46bfd0b6b002a1c0
---
gnu/packages/bioinformatics.scm | 22 +++++++++++++---------
1 file changed, 13 insertions(+), 9 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ec5fd51d7b..548a9a2496 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -22721,27 +22721,31 @@ pairs.")
(license license:expat)))
(define-public r-hdf5dataframe
- (let ((commit "1e30e6b82b5599d5d98fbcb8bf7312dd1711ca3c")
- (revision "2"))
+ (let ((commit "61c52cb4ee940e623363ac7fdaa67766ed6947fa")
+ (revision "1"))
(package
(name "r-hdf5dataframe")
- (version (git-version "0.0.0" revision commit))
+ (version (git-version "0.99.3" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/BIMSBbioinfo/HDF5DataFrame";)
- (commit commit)))
+ (url "https://github.com/BIMSBbioinfo/HDF5DataFrame";)
+ (commit commit)))
(file-name (git-file-name name version))
(sha256
- (base32 "0y6hp31gy17v87ll4rij6pwy6b7k7gnw8iwnvzsaa13ga73g69ak"))))
+ (base32 "0awd2q5q2rh0lmls0cb5shhi20cs82jc43gphfhx10fwrc4cfmrg"))))
(properties `((upstream-name . "HDF5DataFrame")))
(build-system r-build-system)
- (propagated-inputs (list r-biocgenerics r-delayedarray r-hdf5array
- r-rhdf5 r-s4vectors))
+ (propagated-inputs (list r-biocgenerics
+ r-delayedarray
+ r-h5mread
+ r-hdf5array
+ r-rhdf5
+ r-s4vectors))
(native-inputs (list r-knitr r-testthat))
(home-page "https://github.com/BIMSBbioinfo/HDF5DataFrame";)
- (synopsis "Bioconductor-friendly bindings for Parquet")
+ (synopsis "HDF5-backed DataFrame objects and methods")
(description
"This package implements bindings for h5 files that are compatible with
Bioconductor S4 data structures, namely the @code{DataFrame} and
